rs46513538 SNP Detail

Summary

• ID
  rs46513538
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTGTCG CTAGGATGAT
  GGCATGGGCC ATCACACTTG GCTACAAGCC TTTATCTTAG TCTTTTGTTT TTGTTTTTTT
  AAGAGAAAAA AATCACCCCC ATAATATCTA CCCACTCACT GAGCCACCTT GAAGCCCTAA
  CTGTCTCACC CTATCTGTCA TAAAACCTTA ATTTGGATGC TTTTTTCTGC TGCTGAATAA
  M
  GTTGATAAAG CTAGCCCTTC AAGAAATATG AATTCTCAAG TCTCAAAAAA AAAAATGCAG
  CTTTGTGGTG AGAATTTTAG TTTCTTTAAA AAACCAGTTA GGAGAATGTT TTGTTTTAAT
  CCCAGGTGTG AGATAAGAGG CTGCTTCACA GCAGGTGATT AGGATTTGCC TCAGGCACTA
  GCAGGGGTGT GATCTTTGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52314493	NES15371724	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46513538					SNP	A	C	C	C	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314493	NES15371724	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4477	CpG island 4477	1670 bp distal
Gm49586	predicted gene, 49586	1531 bp downstream
Rr463715	regulatory region 463715	1153 bp distal
Rr463717	regulatory region 463717	1645 bp distal
Tssr112933	transcription start site region 112933	1620 bp downstream