rs46514655 SNP Detail

Summary

• ID
  rs46514655
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60733277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGGAATTAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  AAGTCTGGCT TCTTTGTCAG CAAAGTAAGG CCGGAAATAG TTTTGCTTCC TGCAAATGGA
  G
  AAGGCTGGAA TGTATGTTTG TTAATTCTGG CTTAATGTGG TAAGACTTTA TTCCAGACTG
  ATAACCTCTA ACTTAAAAGT GCACACTAGA TGTTTAGACG A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss146652223	ENSMUSSNP4654454	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46514655					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60733277 () rs orientation: forward

Symbol	Name	Function Class
Gm74814	predicted gene, 74814	1069 bp upstream
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr396989	regulatory region 396989	326 bp upstream
Rr557735	regulatory region 557735	1080 bp distal
Rr557736	regulatory region 557736	788 bp distal
Rr557737	regulatory region 557737	within coordinates
Rr557738	regulatory region 557738	630 bp proximal
Rr557739	regulatory region 557739	1206 bp proximal
Tssr17890	transcription start site region 17890	966 bp downstream
Tssr24237	transcription start site region 24237	166 bp upstream
Tssr24238	transcription start site region 24238	93 bp upstream