rs46515409 SNP Detail

Summary

• ID
  rs46515409
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46386436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCAGTC TTCTTTCGGG
  ACCTTCCCGA GCGCAGGAGC TTCTGTCATT CAGTGCGAAG CTGTTGCTCT TGAAGTTTGA
  CAGAGCAGCT CTTCCAGATA AACTTTTTGC TTACTCTGCA CAGTTCTCTT TCTCTCTGCA
  GAGCTTGCTT CTGGCTTTGC AGCTGCTTTA GCTTTAGGAC GTTAGTTAAG AACAGGTTTC
  K
  GGAGAGCCAA GCATTAGCTC GGGATTGAAG GGGATCATAG CTCGCCACCA GGTGCGTGAC
  AGAGACCTGA GTGGGCAGGA GGAATGAAGA AGCGCATTCT GTCTTGTCTT CGTGATTTCA
  GCCGAAGTTT AAAGATGCCC TGTAAAAGAT CAGTTTCCAA ATGGGCTGGC TGTCTTTGGG
  GGTAGAAATG GCACTTTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60312985	NES15818148	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46515409					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312985	NES15818148	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46386436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11002	CpG island 11002	572 bp distal
Gm59146	predicted gene, 59146	1840 bp downstream
Rr406001	regulatory region 406001	1070 bp downstream
Rr548729	regulatory region 548729	1760 bp distal
Rr548730	regulatory region 548730	961 bp distal
Rr548731	regulatory region 548731	1235 bp distal
Rr548732	regulatory region 548732	1127 bp distal
Rr548733	regulatory region 548733	415 bp distal
Rr548734	regulatory region 548734	373 bp distal
Rr548735	regulatory region 548735	2000 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	within coordinates
Tssr156753	transcription start site region 156753	998 bp downstream
Tssr156754	transcription start site region 156754	964 bp downstream