rs46515993 SNP Detail

Summary

• ID
  rs46515993
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26493463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAG GAAAGGGAGA TTTTTGAATA
  W
  TTTAAGCACA GAGATCTCAC ACACC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52328587	NES15372097	PERLEGEN	MM_PANEL2	f	SNP	A		A	T	A	A	A	T	T	A	T	A	A	A	T	T
ss137438991	ENSMUSSNP5028751	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46515993					SNP	A	A	A	T	A	A	A	T	T	A	T	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328587	NES15372097	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26493463 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	658 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	277 bp upstream
Tssr112999	transcription start site region 112999	324 bp upstream
Tssr113000	transcription start site region 113000	448 bp upstream
Tssr113001	transcription start site region 113001	922 bp upstream
Tssr113002	transcription start site region 113002	946 bp upstream
Tssr113003	transcription start site region 113003	1021 bp upstream
Tssr113004	transcription start site region 113004	1081 bp upstream
Tssr113005	transcription start site region 113005	1107 bp upstream
Tssr113006	transcription start site region 113006	1470 bp upstream
Tssr113007	transcription start site region 113007	1554 bp upstream
Tssr113008	transcription start site region 113008	1722 bp upstream
Tssr113009	transcription start site region 113009	1740 bp upstream
Tssr113010	transcription start site region 113010	1890 bp upstream
Tssr115902	transcription start site region 115902	594 bp upstream
Tssr115903	transcription start site region 115903	264 bp upstream
Tssr115904	transcription start site region 115904	240 bp upstream
Tssr115905	transcription start site region 115905	47 bp downstream
Tssr115906	transcription start site region 115906	175 bp downstream
Tssr115907	transcription start site region 115907	230 bp downstream
Tssr115908	transcription start site region 115908	270 bp downstream
Tssr115909	transcription start site region 115909	356 bp downstream
Tssr115910	transcription start site region 115910	408 bp downstream
Tssr115911	transcription start site region 115911	458 bp downstream
Tssr115912	transcription start site region 115912	472 bp downstream
Tssr115913	transcription start site region 115913	507 bp downstream
Tssr115914	transcription start site region 115914	559 bp downstream
Tssr115915	transcription start site region 115915	588 bp downstream
Tssr115916	transcription start site region 115916	645 bp downstream
Tssr115917	transcription start site region 115917	691 bp downstream
Tssr115918	transcription start site region 115918	710 bp downstream
Tssr115919	transcription start site region 115919	737 bp downstream
Tssr115920	transcription start site region 115920	764 bp downstream
Tssr115921	transcription start site region 115921	1069 bp downstream
Tssr115922	transcription start site region 115922	1165 bp downstream
Tssr115923	transcription start site region 115923	1248 bp downstream
Tssr115924	transcription start site region 115924	1319 bp downstream
Tssr115925	transcription start site region 115925	1334 bp downstream
Tssr115926	transcription start site region 115926	1683 bp downstream
Tssr115927	transcription start site region 115927	1727 bp downstream