rs46516802 SNP Detail

Summary

• ID
  rs46516802
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152494714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG CAGGTTCAAA TCTGGTCCCC
  R
  TACTTAACAC AGCCTGGGCT AGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147970840	ENSMUSSNP5503634	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320562899	CHEV_2_152478530	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46516802					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152494714 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	89 bp downstream
D2Ertd691e	DNA segment, Chr 2, ERATO Doi 691, expressed	1678 bp distal
Rr374088	regulatory region 374088	within coordinates
Rr567410	regulatory region 567410	58 bp proximal
Rr567411	regulatory region 567411	1251 bp proximal
Rr567412	regulatory region 567412	1548 bp proximal
Tssr26849	transcription start site region 26849	1459 bp downstream
Tssr26850	transcription start site region 26850	1467 bp downstream
Tssr26851	transcription start site region 26851	1494 bp downstream
Tssr26852	transcription start site region 26852	1520 bp downstream