rs46523153 SNP Detail

Summary

• ID
  rs46523153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84441237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA AATCTTGCCA GGCCTGGTGG
  Y
  GTACGCCTTT AATCCCAGCA CTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145360634	ENSMUSSNP1809801	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322745598	CHEV_8_86238507	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46523153					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84441237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20654	CpG island 20654	302 bp proximal
Ddx39a	DEAD box helicase 39a	569 bp upstream
Rr382392	regulatory region 382392	501 bp downstream
Rr401010	regulatory region 401010	366 bp upstream
Rr666291	regulatory region 666291	60 bp distal
Rr666292	regulatory region 666292	79 bp proximal
Rr666293	regulatory region 666293	951 bp proximal
Rr666294	regulatory region 666294	1980 bp proximal
Tssr78284	transcription start site region 78284	583 bp upstream
Tssr78285	transcription start site region 78285	619 bp upstream
Tssr78286	transcription start site region 78286	631 bp upstream
Tssr78287	transcription start site region 78287	697 bp upstream
Tssr78288	transcription start site region 78288	896 bp upstream