rs46523450 SNP Detail

Summary

• ID
  rs46523450
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164907606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT AATCTCGGGA GGCTTCAGCC
  G
  ACTTGTAAAG GTGCTGAGGG CCTTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148234649	ENSMUSSNP3616970	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320607399	CHEV_2_164891186	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46523450					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164907606 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21708	transcription start site region 21708	1523 bp downstream
Tssr21709	transcription start site region 21709	1481 bp downstream
Tssr21710	transcription start site region 21710	747 bp downstream
Tssr21711	transcription start site region 21711	684 bp downstream
Tssr21712	transcription start site region 21712	661 bp downstream
Tssr21713	transcription start site region 21713	15 bp upstream
Tssr21714	transcription start site region 21714	973 bp upstream
Tssr21715	transcription start site region 21715	1019 bp upstream
Tssr21716	transcription start site region 21716	1073 bp upstream
Tssr21717	transcription start site region 21717	1160 bp upstream
Tssr21718	transcription start site region 21718	1206 bp upstream
Tssr21719	transcription start site region 21719	1297 bp upstream
Tssr21720	transcription start site region 21720	1500 bp upstream
Tssr21721	transcription start site region 21721	1543 bp upstream
Tssr27603	transcription start site region 27603	302 bp upstream