rs46525199 SNP Detail

Summary

• ID
  rs46525199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124047021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTGGCT GTCGAGGACC
  TCGCGTGGGC CTTGGTTCTG TACACTGTGT GGATCCCGTG GCCCTCAGGC TTGGCATCAG
  GTGCCCCATA TGCTCCTTGA GCAATGTTAA ATTCTTACAG CACAGGGAGG GTGTTGGTTA
  AGGAGTAGAC GGAGAAGATG AGGTCGGAGT GATGTGTAGT CCGACAGTCT GGGGAAAGTC
  Y
  GGCTTGAATA ATATGATGGG GTTTTGTGTG TGTATGTGTT TGTGTGTGCA TGTGATAGCA
  GAGGTTAGTG TTGGATGACT CCCTGACTCA CTCCGGTGTG TCAGTTCTTG GGAGAGGTCT
  CTCACTGCAT CTGGCACGCA CTAATGAGCT GGACCAGCAG GCTAACAGGC ACTATGGATT
  CTTGGCCTCC CCAGGGTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835993	NES16018298	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46525199					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835993	NES16018298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124047021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16594	CpG island 16594	1084 bp distal
Denr	density-regulated protein	within coordinates
Rr124363	regulatory region 124363	220 bp distal
Rr399353	regulatory region 399353	1625 bp downstream
Tssr48807	transcription start site region 48807	1761 bp downstream
Tssr48808	transcription start site region 48808	1748 bp downstream
Tssr48809	transcription start site region 48809	1666 bp downstream
Tssr48810	transcription start site region 48810	1643 bp downstream
Tssr48811	transcription start site region 48811	1571 bp downstream
Tssr48812	transcription start site region 48812	1398 bp downstream
Tssr48813	transcription start site region 48813	1387 bp downstream
Tssr48814	transcription start site region 48814	1371 bp downstream
Tssr48815	transcription start site region 48815	1351 bp downstream
Tssr48816	transcription start site region 48816	1325 bp downstream
Tssr48817	transcription start site region 48817	844 bp downstream
Tssr48818	transcription start site region 48818	770 bp downstream
Tssr48819	transcription start site region 48819	132 bp upstream
Tssr48820	transcription start site region 48820	166 bp upstream
Tssr53283	transcription start site region 53283	1535 bp downstream