rs46525235 SNP Detail

Summary

• ID
  rs46525235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:23293625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA TGGCAGCTTA TGCCTATAAT
  Y
  CCAGCACCTA GAAGGCTGAG GCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148843693	ENSMUSSNP2880020	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss322527931	CHEV_8_23914081	CHEVERUD	SCREENING_POP	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46525235					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23293625 () rs orientation: forward

Symbol	Name	Function Class
Ap3m2	adaptor-related protein complex 3, mu 2 subunit	within coordinates
Cpgi20156	CpG island 20156	1698 bp proximal
D8Dcr5	DNA Segment, Chr 8, Derry C. Roopenian 5	1495 bp distal
Rr381798	regulatory region 381798	within coordinates
Rr400791	regulatory region 400791	1957 bp upstream
Rr660722	regulatory region 660722	1520 bp distal
Rr660723	regulatory region 660723	1690 bp distal
Rr660724	regulatory region 660724	1406 bp proximal
Rr660725	regulatory region 660725	1985 bp proximal
Tssr80611	transcription start site region 80611	274 bp downstream
Tssr80612	transcription start site region 80612	1987 bp downstream