rs46526925 SNP Detail

Summary

• ID
  rs46526925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23894210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTG TGAGCAGTTG AAGATTTCTC
  R
  GCAGCCTTTG GGGAGGGTGG GGTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145330317	ENSMUSSNP5814318	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325326755	CHEV_17_23812203	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46526925					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23894210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8682	CpG island 8682	1123 bp distal
Cpgi8683	CpG island 8683	1204 bp proximal
Hcfc1r1	host cell factor C1 regulator 1 (XPO1-dependent)	9 bp downstream
Rr339270	regulatory region 339270	within coordinates
Rr405075	regulatory region 405075	1491 bp downstream
Thoc6	THO complex 6	1354 bp upstream
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	209 bp downstream
Tssr142940	transcription start site region 142940	1584 bp downstream
Tssr142941	transcription start site region 142941	1249 bp downstream
Tssr142942	transcription start site region 142942	1235 bp downstream
Tssr146635	transcription start site region 146635	1659 bp upstream
Tssr146636	transcription start site region 146636	1349 bp upstream
Tssr146637	transcription start site region 146637	132 bp upstream
Tssr146638	transcription start site region 146638	615 bp downstream
Tssr146639	transcription start site region 146639	1326 bp downstream
Tssr146640	transcription start site region 146640	1351 bp downstream
Tssr146641	transcription start site region 146641	1405 bp downstream
Tssr146642	transcription start site region 146642	1424 bp downstream