rs46527452 SNP Detail

Summary

• ID
  rs46527452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73931652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCCCTT GAGGGTGTGT
  GGGTTGTTCT GCACTCTTTG CTGGCCGCCA GGATCCGGGA ATTCACAATG CAGGGCGCCT
  TTGAGTCGAA GAGAAGCAGG GCAGGGACCA TCTAGCAACC GCGATGGGAG GAGGGAGGAG
  GCGGCCAGTC GGAGGAAAGC ATCAGGGCCT AGCCTGACGC AGCAGCAGCC CTGGAAGTGG
  Y
  CCCCGCCAGA GCTTCTGAGC GTCAGGGGAC AGTCGGTCCT GTGCCTCCTC CAACCGCGAG
  CCCTAGGAGG GTCCTGGGCT CCCACCGCCC TCAGCCTTCA AGCCCAAGCC AAGGGAGGTG
  CCCTCTGAGC TAGCTAGGAA AGGAGGCGGG GATTGGAGCG TGTGAAGAGG AGAGGGAGGG
  ACGGGTTCTC CTCGCCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss146558473	ENSMUSSNP2430156	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46527452					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73931652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14388	CpG island 14388	within coordinates
Frmd3	FERM domain containing 3	27 bp upstream
Rr101135	regulatory region 101135	within coordinates
Tssr37633	transcription start site region 37633	179 bp upstream