rs46529557 SNP Detail

Summary

• ID
  rs46529557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:29351746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTAATAC TGGTAAATAT
  AAATTCTTTA AAGAGGGCTA AGTTTTCTCC TTATCCCTCT TGTCTGAGTC TTCCGCACCC
  CCTCAGCCCC CCACAGAGGA ACCTAGAGCA CATATAAATT CCTTTAGGAA TTGTCAAGCC
  ATTTCTCAAG ACCACACTAT GATGCCCCAC TCAAGACAGA CTATAAACTA ACATTTTTTT
  Y
  ATATCCAGTT TGCCAACTTT CCTGTATAAT GTGGGGACTA TAAGCTGGAA GTTCAGCACC
  CTGGTTCCAG AGCCACCAAT CTTGGCTTCG CAATTTTCAA GCGATGAGAT GCCGTGAGGA
  CTAAACATGT CAAACATTTC AGTTCCCCTA TCTGTATTAA ACAGGAGCAT CGATAGTTTC
  TGGGATTGCT GTAAAGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136239097	ENSMUSSNP4979417	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46529557					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:29351746 () rs orientation: forward

Symbol	Name	Function Class
Gm68891	predicted gene, 68891	within coordinates
Ntm	neurotrimin	within coordinates
Tssr84200	transcription start site region 84200	1922 bp upstream
Tssr84201	transcription start site region 84201	1947 bp upstream