rs46530077 SNP Detail

Summary

• ID
  rs46530077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100826472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA CAGAGCAGCC AGAGGGAATG
  Y
  GCACTTGCAC ACAGACTCAC ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148928299	ENSMUSSNP2526803	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321627448	CHEV_5_101107625	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46530077					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100826472 () rs orientation: forward

Symbol	Name	Function Class
Gm15777	predicted gene 15777	within coordinates
Hpse	heparanase	878 bp downstream
Rr378347	regulatory region 378347	910 bp upstream
Rr615545	regulatory region 615545	1230 bp proximal
Tssr52114	transcription start site region 52114	1463 bp downstream