rs46530190 SNP Detail

Summary

• ID
  rs46530190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171018574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTATTCGTT CATTTTTTGG CGCAGGGTCT CCCTTTGTAC
  CCGAGACTGG TCTTGAACTG GCTACATAGC TGAGGGGCCT CAAACTCATC CTCCTGATTC
  Y
  ACCTCCTAGA CCACAGATGT GCGCGCACAT CACAAAGGAG TGATGAATCT ACTTTGACGG
  AGCTTACTTG TGTGTGTGAG GCAGGACAGG TACTGTACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss119995969	PARCsnp_1.12062	PARC_SEQ	INBRED	f	SNP			C	T
ss119997565	PARCsnp_1.01051	PARC_SEQ	INBRED	f	SNP			C	T
ss146156095	ENSMUSSNP952468	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs46530190					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171018574 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	118 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423236	regulatory region 423236	1334 bp distal
Rr423237	regulatory region 423237	920 bp distal
Rr423238	regulatory region 423238	659 bp distal