rs46530360 SNP Detail

Summary

• ID
  rs46530360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123619676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGGAGGG CCACTCTGTC
  TCAAGGTGGG TGAAGTCTCA TAGTGCTTCA GTGGTATTGG CGAGCAGGCA GCTGGCAACA
  CTACTGACCT GACTGTTAGG AATAGGCTGA GTCATTAGAG GAGAGGCTGC CCTCAGGAAG
  AGAATCACCA AGATCTCAAG GATGTTTCCT TATGATCTTT GGTGTAATTA AATCCAGCTG
  R
  GCCATCATCT TCCTTAATGA TTCTTCAGTT GTCAATTGCA TTTTTCAAAA ATTTACTCCA
  ATGACTAAAC CCCAGTAAAA CTGGGGACTA CTTAAAACCA TAAAGCTATG TATGAAAGGC
  ACACTTACAC AGGGCCAAAT GTTCTCTAGT AACCTAGTGC TCAGCAGACT GGAGCAAGTA
  CAGTACAAAG CCCATTTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61241404	NES16861508	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs46530360					SNP	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61241404	NES16861508	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123619676 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	1443 bp downstream
Tssr92158	transcription start site region 92158	1458 bp downstream
Tssr92159	transcription start site region 92159	1466 bp downstream
Tssr92160	transcription start site region 92160	1859 bp downstream
Tssr92161	transcription start site region 92161	1876 bp downstream