rs46530368 SNP Detail

Summary

• ID
  rs46530368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:122849226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTTTATTTCA TCCACAAAAC CACCCGCATG AGAAGCAAGG
  TAGCATGTAA GAATGTCCAT GAAAAAGCTC TTTAACAGGG AATAAAGTGT TTCTTCCAAG
  Y
  CCCATACATT AAATATTATT TGTATTTTAT ATATCAACAA AACAAGTTTT GCTGTGTAGC
  CCTGGCTATG TAGAGCTATT TAGAGCAGGC TGTTCTCGGA C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss137074943	ENSMUSSNP4004418	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46530368					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122849226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22546	CpG island 22546	650 bp proximal
Gm9856	predicted gene 9856	within coordinates
Gm49323	predicted gene, 49323	1257 bp upstream
Kif15	kinesin family member 15	1428 bp downstream
Rr205950	regulatory region 205950	within coordinates
Tmem42	transmembrane protein 42	1165 bp upstream
Tssr87875	transcription start site region 87875	958 bp upstream
Tssr87876	transcription start site region 87876	1154 bp upstream
Tssr92115	transcription start site region 92115	1053 bp downstream
Tssr92116	transcription start site region 92116	1254 bp downstream
Tssr92117	transcription start site region 92117	1361 bp downstream