rs46530789 SNP Detail

Summary

• ID
  rs46530789
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32690103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTC ACAACCATCT GTAATGGGAT
  T
  AGATGCCCTT TTCTGGTGTG TTTGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147954712	ENSMUSSNP5680999	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325137928	CHEV_16_32869819	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46530789					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32690103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	1322 bp distal
Rr323396	regulatory region 323396	603 bp proximal
Rr325218	regulatory region 325218	702 bp distal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140828	transcription start site region 140828	1453 bp upstream
Tssr140829	transcription start site region 140829	1415 bp upstream
Tssr140830	transcription start site region 140830	1365 bp upstream
Tssr140831	transcription start site region 140831	225 bp downstream