rs46530996 SNP Detail

Summary

• ID
  rs46530996
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:53225712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTATCAG AAACAAGGCA
  GCATAGTTTC AAACATTATC CCTGCCCCTG TTTCTCTCTC TGTTCCCTAT CTGTTCCCAC
  CAGAGTCATC TTCTACTGCC CTGCCTATGT CTATTCTTGA TGGGCAAGTG AGGTCCATTA
  GGGTTGCTGC TGTAAGGTTC TGGGAGAGGG ATATTTACAG AGCACACACA CTCCTCAACA
  S
  TGCTACCACA CTGAAGAAAA TGCCTTTCCC TCCCCTAACT GGACAGTGAT CTGAGCTCAG
  GGAACAGTGG TGTCTAATAA GCCCAAATCC CCTAGCTACC TTTAGCTGCC TAGAGGGCTG
  GGCAGGGATG TTCACTGCCC TTCTTCCTTT TCCTAGTCCC ACCCATGACA GAATCCTGCA
  GGTACAATCT TGCGCAGATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52292178	NES15299034	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46530996					SNP	C	C	C	C	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52292178	NES15299034	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:53225712 () rs orientation: forward

Symbol	Name	Function Class
Cep85l	centrosomal protein 85-like	within coordinates
Tssr97581	transcription start site region 97581	1099 bp upstream
Tssr97582	transcription start site region 97582	978 bp upstream
Tssr97583	transcription start site region 97583	165 bp downstream
Tssr97584	transcription start site region 97584	199 bp downstream