rs46531093 SNP Detail

Summary

• ID
  rs46531093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGC TGTAATGTTC CTAGGGTTGC
  R
  TATGGTGATG CTGCATCTTC AAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148682340	ENSMUSSNP745678	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss322135218	CHEV_7_31338842	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46531093					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	1172 bp distal
Cpgi18809	CpG island 18809	289 bp distal
Cpgi18810	CpG island 18810	403 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1618 bp downstream
Mir9769	microRNA 9769	919 bp downstream
Proser3	proline and serine rich 3	1524 bp upstream
Rr400242	regulatory region 400242	1331 bp downstream
Tssr65779	transcription start site region 65779	1259 bp downstream
Tssr65780	transcription start site region 65780	551 bp downstream
Tssr65781	transcription start site region 65781	514 bp downstream
Tssr65782	transcription start site region 65782	949 bp upstream
Tssr65783	transcription start site region 65783	1024 bp upstream
Tssr65784	transcription start site region 65784	1048 bp upstream
Tssr65785	transcription start site region 65785	1100 bp upstream
Tssr65786	transcription start site region 65786	1118 bp upstream
Tssr65787	transcription start site region 65787	1212 bp upstream
Tssr71787	transcription start site region 71787	1507 bp upstream
Tssr71788	transcription start site region 71788	1448 bp upstream
Tssr71789	transcription start site region 71789	842 bp downstream
Tssr71790	transcription start site region 71790	954 bp downstream