rs46532193 SNP Detail

Summary

• ID
  rs46532193
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:92897661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCATGCC CCAAGCTAAC
  GCTCTCCTGG GGTTTGATGA TGGGAGGAAT GATCATCCTT ATCATTTTTC TTGTCACTTC
  AGCACAAGAT CACGGAAATA ACCAACGTGA TCATATTTTA AATATGTTGA CGCCACAATC
  TTCCGGTCTC ATTTTATGGC ATTGCGAGTT TTAAAATATA CTGGAGAGAA TATTTTAGCA
  R
  GTAATTTATA TATACCTTGT GGTTTTATTA TCTTCTTTGT TCCTGTGGCT TCCTTATGGT
  TGAAAATGAG AGATTTATCT CTGGATAATA TTAGGATACA TTTAATCAAG AAGGAAGTCC
  TGTGTGGTTT AAAACTTGAG ACAGGTGAGA AGCTGTGTTT TACCCCTTGC CTGCCTCAGA
  TAATATTCAC CCCGTTATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61303550	NES16913781	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46532193					SNP	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61303550	NES16913781	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:92897661 () rs orientation: forward

Symbol	Name	Function Class
Cfap54	cilia and flagella associated protein 54	within coordinates
Rr217502	regulatory region 217502	461 bp distal
Rr223960	regulatory region 223960	1193 bp distal
Rr229468	regulatory region 229468	1842 bp proximal