rs46532526 SNP Detail

Summary

• ID
  rs46532526
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172037673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCG GGAAGAGAAA CAGATAAGGT
  M
  TGGGGGAAGA AGCAAGTCAG ATGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007440	PARCsnp_1.17798	PARC_SEQ	INBRED	f	SNP		A	C
ss120010343	PARCsnp_1.07439	PARC_SEQ	INBRED	f	SNP		A	C
ss146183980	ENSMUSSNP6069171	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320123247	CHEV_1_174140237	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46532526					SNP	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172037673 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	mRNA-UTR
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	217 bp upstream
Tssr15168	transcription start site region 15168	within coordinates
Tssr15169	transcription start site region 15169	87 bp downstream
Tssr15170	transcription start site region 15170	114 bp downstream
Tssr15171	transcription start site region 15171	128 bp downstream
Tssr15172	transcription start site region 15172	210 bp downstream
Tssr15173	transcription start site region 15173	302 bp downstream
Tssr15174	transcription start site region 15174	354 bp downstream
Tssr15175	transcription start site region 15175	1877 bp downstream