rs46533301 SNP Detail

Summary

• ID
  rs46533301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87322937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATAAAAT TCCCTGCAAG
  ATTTCCTTTC AGCCCTCTCT CCTTATATTG CGTGTTAAAG TGTGAGATAT CTCTTTCACT
  AATCTTTTTT CCACCATTTC TTGAGGGGGG ATTTAGTTGG ATAAGGATGT TTAGGCATAA
  TTGATGAGTT GATTTTTTTC TGGTTTTCTT ATCAGATCCC ACCTCATCAG TATGGCTATG
  R
  TAGTAGGTAT AGGTCATTTA TTTACCTGAA ACAATACCTC TGCCCTTCTT TATTGCAGAG
  GAAGAACTTT GGTCTTTGTT TGGTTTTAAA GCTGTGTAGT AGGCTTGACT AGGAATATGA
  TTGCTTGATG CCTTGTACGT CTCTTTAAGG TGAAAGAAGG AAAGAATTTT CTTAAGGCTT
  GCTTTAGTGA TCTGTAGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60763787	NES16401424	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46533301					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60763787	NES16401424	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87322937 () rs orientation: forward

Symbol	Name	Function Class
Gigyf2	GRB10 interacting GYF protein 2	within coordinates
Kcnj13	potassium inwardly-rectifying channel, subfamily J, member 13	486 bp upstream
Rr414787	regulatory region 414787	497 bp distal
Rr414788	regulatory region 414788	328 bp distal
Tssr12853	transcription start site region 12853	481 bp upstream