rs46533397 SNP Detail

Summary

• ID
  rs46533397
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79152539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA CTTTCTGCCA TTCTAAGATA
  W
  GTGTTTTCAG ACATATTTCA CAGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52508671	NES15574206	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	T		A	A		T	T	A	A		T
ss139802731	ENSMUSSNP367179	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					T
ss324676554	CHEV_14_79314906	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46533397					SNP	A	A	A	A	A	A	T	T	A	A	T	T	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52508671	NES15574206	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79152539 () rs orientation: forward

Symbol	Name	Function Class
Rr293691	regulatory region 293691	738 bp distal
Rr293692	regulatory region 293692	within coordinates
Rr300514	regulatory region 300514	1662 bp proximal
Rr369884	regulatory region 369884	597 bp downstream
Vwa8	von Willebrand factor A domain containing 8	within coordinates