rs46533938 SNP Detail

Summary

• ID
  rs46533938
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49012121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGTCCTGG AACTCACTCT GTAGACCAGG CTGGCCTCAA
  ACTCAGAAAT CCACCTGCCT CTGCCTCCCA AGTGCTGGGA TTAAAGGCGT GCACCACCAC
  T
  GCCTGGCTGT GTCCAAACTC TTAGCTTATC TTTCTAGTCT GTTCCCTCCA TCTTTTAGGC
  CTCTGAGGAT ATTGCAGACC TGAGATAGCT CTTCTCTTC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145722365	ENSMUSSNP5610584	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325410139	CHEV_17_48844418	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs46533938					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49012121 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr13	DNA Segment, Chr 17, Derry C. Roopenian 13	1219 bp proximal
D17Mit178	DNA segment, Chr 17, Massachusetts Institute of Technology 178	1219 bp proximal
Rr392702	regulatory region 392702	1861 bp upstream