rs46534331 SNP Detail

Summary

• ID
  rs46534331
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:84118050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTATATGG TGGCTCACAA
  CCATCTTTAA TTGTATCTGA TGCCTTCTTC TGGTGTGTCT GAAAACAGTT ACTCATATAA
  ATAAAATAAA TAAACCTTAA AAAAAGAAAG AGCACTGGCT GTTTTTCCAG AGGACCCAGG
  TTCAATTCCC AGCAGCCACA TGGCAGGTCA GTAAGTGTCA GTAACTCCAG TTCCAGAGGA
  K
  CTGATGCCCT CACACCAGTG CATATTAAAA TAAAAAAGAT GATTAATTTA ATCAATGAAA
  TGTATAAGAG AGCTTGTTGA GAGTGATGAA CCAATGCTTC TTCAGGCCTT TTATTAGCCC
  AATTAGTTGT TTCTAATAAT AATTCTTTGA TATAAAGTGA TATGTTATAT ATATATATAT
  ATATATGTAT ATGTACACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136716946	ENSMUSSNP1123003	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss323047775	CHEV_9_84129604	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46534331					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:84118050 () rs orientation: forward

Symbol	Name	Function Class
Tssr86376	transcription start site region 86376	1843 bp downstream