rs46534446 SNP Detail

Summary

• ID
  rs46534446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12746845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCAGGCT GAGGCTGGCC
  TTTGCTTTTG GGCCTGAGGA GTAGCAGAAG CTGTGGTGGA GTGTGCACAC CTCATGGCTG
  TCAGGAAGCA GAAAGCCATC CAGAAGGAGG TCCAGAAAAA GACCTGCCCT CCAAAGAGAT
  GAGTCCACTA ACTTACTGTC TCCAAGTAGG TCCGCCTCCA TTGAATTATG CATTCACCAA
  R
  TGACTTAACC CATTTATTAA GTCAAAAACT TCATAAAACA ATTACCTTTC AGCAACTGAC
  TGAGTCTCCA ACATAAGAAG TCTTCATGGA TAGTCCATGA TAGTCTTAGT TCCAAACTTG
  GTCTCTGTAA CTCCTTTTAT GGGTATTTTG TTCCCTATTC TAAGGAGGAA CAAAGTATCC
  ACCCATTGGT CTTACTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146804329	ENSMUSSNP3490802	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss323253707	CHEV_10_12590899	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46534446					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12746845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1301	CpG island 1301	1358 bp distal
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	1244 bp distal
Tssr3138	transcription start site region 3138	1614 bp upstream
Tssr96726	transcription start site region 96726	1964 bp upstream
Tssr96727	transcription start site region 96727	1879 bp upstream
Tssr96728	transcription start site region 96728	1584 bp upstream
Tssr96729	transcription start site region 96729	1460 bp upstream
Utrn	utrophin	1736 bp upstream