rs46535964 SNP Detail

Summary

• ID
  rs46535964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128552381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCATGCAT TTTAGAGAAA GCAGCAGCAG CCTCAGGGCC
  TGGGGGGAGA CTGGCATCAA TTCTAAACAT CTATTCATTT AGTGTTAGGG TGTAATTTTA
  Y
  GTTTGGGGGG GACGGACGGA CAATGTGCTA TACACAGTTA AATGCAAGCC AAAACTCGAC
  TGAGGCAGAG GCTATCAACA GGAGGTGAAG TGGTGTGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147568447	ENSMUSSNP3384866	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46535964					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128552381 () rs orientation: forward

Symbol	Name	Function Class
D2Mit305	DNA segment, Chr 2, Massachusetts Institute of Technology 305	1218 bp distal
D2Mit305.1	DNA segment, Chr 2, Massachusetts Institute of Technology 305.1	1331 bp distal
Mertk	MER proto-oncogene tyrosine kinase	within coordinates
Rr1768	regulatory region 1768	1714 bp upstream
Rr58326	regulatory region 58326	within coordinates
Tssr20064	transcription start site region 20064	1727 bp downstream
Tssr20065	transcription start site region 20065	1678 bp downstream
Tssr20066	transcription start site region 20066	1396 bp downstream
Tssr20067	transcription start site region 20067	1354 bp downstream