rs46536086 SNP Detail

Summary

• ID
  rs46536086
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77387734 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      G CAACCACATG GTGGCTCACA ACCATCTGTA ATGAGATCTG
  ATACCCTTTT CTGGTGTTGT CTGAAGAGAG CTACAGTGTA CTTAGATATA ATAATAAATA
  W
  ATCTTTAGAC AGGAGTGAGC AGAGGTCCTG AATTCAGATT CCCAGTAACC ACATGATGGC
  TCACAACCAT CAGTACAGCT ACAGTGTACT CATATATATA A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149227897	ENSMUSSNP4317956	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46536086					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77387734 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itgb2	integrin beta 2			Intron
				Noncoding-Transcript-Variant
Tssr94243	transcription start site region 94243			1393 bp downstream
Tssr94244	transcription start site region 94244			984 bp downstream
Tssr94245	transcription start site region 94245			1955 bp upstream