rs46537399 SNP Detail

Summary

• ID
  rs46537399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46036287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTAGAT GCTCTCTCTT
  CCAAAGGACC TGAGTTTGCT TCCCGGCATT CCGTGGTAAG CTGCTCACAA CTGCCGGTAA
  CTTCAGCTGT AGGGGACCTA ACAACCATCT CTGGTCTCCT GGCACCCTGT CCCCAAGAGA
  GAGGGGAGGA CCGATTACCT GGGTGTCAGT AGGGCAGGCC CCTTTGAAGA CTGTCTCGAA
  R
  TTGTCCCAGT AAGCCAGCCT CAGGGAGCTG CCACAGCTGA GGTACCACCA TTAGCTGGAC
  CCTTGTGGGA GAGCCCTTCC ATGACATCAT CAGTCAGACT CTAGGCATCA AAACTATCAA
  GTCAGGCTGT TGAACAGGAT TAGAGCACTG AGTGCCGAAA CTTCTAGGCA TCTCTGCTCT
  TCCCAAGCAG AGTGACTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259598	NES15753050	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	A	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46537399					SNP	G	G	A	A	G	A	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259598	NES15753050	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46036287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9206	CpG island 9206	921 bp distal
Gm35456	predicted gene, 35456	within coordinates
Rr331486	regulatory region 331486	487 bp distal
Rr331487	regulatory region 331487	1514 bp proximal
Rr339880	regulatory region 339880	686 bp distal
Rr339881	regulatory region 339881	713 bp proximal