rs46537926 SNP Detail

Summary

• ID
  rs46537926
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7432570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAGGACCC AAGAAGGGCT GTGCCTCACA GAGGGTTTCC
  CTTAACACAC CCCTGTAGCT GTACAAAGGA ATAAACGTCC CGCTTTCAGC TCCGGACAGA
  M
  ATGGTTTTCC CGAAGTGTTT TTCTTGCTGT CACCCTGGTT GGCTAACGAA AGGCTTGCTT
  GAGTGGAATA ACAGAATATG TTGGGCTATG CAGACTGTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134555767	ENSMUSSNP172348	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46537926					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7432570 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	562 bp distal
Pkia	protein kinase inhibitor, alpha	within coordinates
Rr573237	regulatory region 573237	830 bp distal
Rr573238	regulatory region 573238	within coordinates
Tssr814	transcription start site region 814	844 bp downstream
Tssr28292	transcription start site region 28292	916 bp downstream
Tssr28293	transcription start site region 28293	869 bp downstream
Tssr28294	transcription start site region 28294	816 bp downstream
Tssr28295	transcription start site region 28295	797 bp downstream