rs46538335 SNP Detail

Summary

• ID
  rs46538335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65140929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTTTTTT TCGTTTTCTT TTTCTTACCC CCTGCCCTTC
  AGACTGGTGA TGTAGATCAT ATCTCATGAA ACTCTAATCA CCTGTTTCAT GAGAGACTAG
  Y
  CAATAATGAT TCATAAAAAA TACAAAACCA CATGAGCTGA CACCCATTGT TCTAGGCTTT
  AGGTGAGTGT GAGAGTGTAT AGTAAGAAAA ACTCACCACC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60744600	NES16381365	PERLEGEN	MM_PANEL2	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs46538335					SNP	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60744600	NES16381365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65140929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi330	CpG island 330	1178 bp proximal
Cryga	crystallin, gamma A	within coordinates
Gm28845	predicted gene 28845	within coordinates
Tssr102	transcription start site region 102	1118 bp downstream
Tssr7112	transcription start site region 7112	1372 bp downstream
Tssr7113	transcription start site region 7113	1254 bp downstream
Tssr7114	transcription start site region 7114	1240 bp downstream
Tssr7115	transcription start site region 7115	1228 bp downstream
Tssr7116	transcription start site region 7116	1166 bp downstream
Tssr7117	transcription start site region 7117	1127 bp downstream
Tssr7118	transcription start site region 7118	1074 bp downstream
Tssr7119	transcription start site region 7119	1276 bp upstream
Tssr11968	transcription start site region 11968	1323 bp upstream
Tssr11969	transcription start site region 11969	1300 bp upstream
Tssr11970	transcription start site region 11970	1132 bp upstream
Tssr11971	transcription start site region 11971	1108 bp upstream
Tssr11972	transcription start site region 11972	1087 bp upstream
Tssr11973	transcription start site region 11973	1237 bp downstream
Tssr11974	transcription start site region 11974	1312 bp downstream
Tssr11975	transcription start site region 11975	1379 bp downstream
Tssr11976	transcription start site region 11976	1593 bp downstream