rs46538782 SNP Detail

Summary

• ID
  rs46538782
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110767626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGCGGA GAGGCAGAAT
  CCTAGCACAG CTGATCAAAC TGCTTGCGAA GGAATCTCAC GAACAACAAT ATGAACCAAG
  CTTACAGCAC TGGGACCAAA GGTGTGCGCC ACCACAAAGC TTCCTTTTAA AATTATTTTC
  ACATTCACTT CTGTTTTGTG TGTATGCATG CACATGTAAA GGTGTATGTC ACAGGTCAAC
  G
  CAAAGTGTCT CTTCTCGATT ATTCTGTACT GACTTTTAGA AGACTTATGT GTGGGGCTGA
  AGAGATGGCT CAGTGGTTAA GAGCACAGAC TGCTCTTCCA GAGTTCAGTT CCCAGCAACC
  ACATGATGGT TCACAACCAT CTGTAATGGG ATCTGATGCC CTCTTCTGGT GTGTCTGAAG
  ACAGCTACAG TGTACTCATA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136960281	ENSMUSSNP2642378	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46538782					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110767626 () rs orientation: forward

Symbol	Name	Function Class
Cripto	cripto, EGF-CFC family member	1050 bp downstream
Rr192786	regulatory region 192786	826 bp distal
Rr192787	regulatory region 192787	within coordinates
Rr202610	regulatory region 202610	859 bp distal
Rr207413	regulatory region 207413	626 bp distal