rs46538917 SNP Detail

Summary

• ID
  rs46538917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10376656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTTCCTGA TGGATCCACC TGTGCTACCT TCCAGGTGAC
  TTTTGGTGTA TGCCTTTTCC GAGCTTCAGT TTTAGCCGTT CTGGTGTTGG GGTATTGTTT
  Y
  CATGTCATTT CTTGAGTGAA TGTCTGTACC AAGTAGGTTA TGTTTGCTCG TTTTAAGAAT
  ATATTTGCTT ACATTTGCAA ATGCACTGTC CTGTGTGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134581184	ENSMUSSNP4017145	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320653414	CHEV_3_10311596	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46538917					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10376656 () rs orientation: forward

Symbol	Name	Function Class
Impa1	inositol (myo)-1(or 4)-monophosphatase 1	360 bp downstream