rs46539170 SNP Detail

Summary

• ID
  rs46539170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:124939266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGCTCT GTTGGCCTGG
  AACTCCATCT GATGAATGAG CCGGCCAGCC TTCTAGTGGC TATTTTTACC CCAATCACAA
  AAGACGATGA CTTAGAACTT CAGTTCAAAC TGACAGACTC CTAACTAAGT GACTGCAGAA
  ATGGAGTTTC AGTTCAGACC CAGACAGGGG AGGCCAATGG CTCTCCTTAG ACTCCCTGGA
  Y
  TCACAACAGG TCGTCTCTGG CTTTGGACTG GCAGCTGGCA AGGCTGTCAC TTACCTTGAC
  TTTGGCAGCC AGAGTGACAA CTGACAGATG TCGAAGCTTA TTCTTCTGTG CGTCAGTCAG
  TGGGGGGAGA TTCCTGGCTT CAGCTAGAGA CAGGGAGAGA AGCCCGGGAA TCTTGTTTTT
  AGCAGTTTCC TACAAGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60940872	NES16182883	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46539170					SNP	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60940872	NES16182883	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124939266 () rs orientation: forward

Symbol	Name	Function Class
Cops7a	COP9 signalosome subunit 7A	Intron
Gm23851	predicted gene, 23851	1982 bp upstream
Tssr63234	transcription start site region 63234	122 bp downstream