rs46539340 SNP Detail

Summary

• ID
  rs46539340
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90918981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCC TGGCTTCAAG ATCTTCAGGG
  M
  TCCAGACATG TCCGAAGTGA AGAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147290259	ENSMUSSNP6883948	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323387280	CHEV_10_90545864	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs46539340					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90918981 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	349 bp upstream
Cpgi2099	CpG island 2099	within coordinates
Ikbip	IKBKB interacting protein	within coordinates
Rr402144	regulatory region 402144	within coordinates
Rr436976	regulatory region 436976	701 bp distal
Rr436977	regulatory region 436977	52 bp distal
Tssr95222	transcription start site region 95222	1016 bp downstream
Tssr95223	transcription start site region 95223	91 bp downstream
Tssr95224	transcription start site region 95224	44 bp downstream
Tssr95225	transcription start site region 95225	16 bp downstream
Tssr98900	transcription start site region 98900	542 bp upstream
Tssr98901	transcription start site region 98901	458 bp upstream
Tssr98902	transcription start site region 98902	419 bp upstream
Tssr98903	transcription start site region 98903	346 bp upstream
Tssr98904	transcription start site region 98904	312 bp upstream