rs46539626 SNP Detail

Summary

• ID
  rs46539626
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23943241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATCTTGT GTGTGTGTTA
  GTGTACACAT ACGAAAGCAT ACGTGTGGGT ATCAGAGGAT AACTTAGGAA AATTGAGTCT
  CTCCTTCTAG CTCCAAGAGC TTAAATTCAG GTCTTCAAGC TTGGCAGCAA CTTTATCAGA
  TAAATCATGT CACTGAGTTC TTTTGTCTTG GTATATAAAT CATGTTAGCC TGGAACTTAC
  W
  ATGTAGCCCA GTCTCATCTT AAATTCATGA CCTATATGAA GGGTTTTTAA AGTGAATATA
  CATCATGAAT CATTTTATGC ACATCCCCAG GCAAAAGCCA CACTATGGTG CTGCCATAAT
  TAATTCCTCA ATTAGGAATG ACAATTGGTA ATGTAAGGAA AAGTGAGAGG TTCCTATCCA
  CAGTAGAGGT CCACCAAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148808310	ENSMUSSNP2637439	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		A
ss324291488	CHEV_13_23851127	CHEVERUD	SCREENING_POP	f	SNP				T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46539626					SNP	T	T	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23943241 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1620 bp upstream
Cpgi5375	CpG island 5375	1761 bp distal
Cpgi5376	CpG island 5376	1421 bp proximal
H4c1	H4 clustered histone 1	1537 bp downstream
H4c2	H4 clustered histone 2	1849 bp downstream
Rr388131	regulatory region 388131	1400 bp downstream
Rr388132	regulatory region 388132	538 bp upstream
Rr475944	regulatory region 475944	1130 bp distal
Rr475945	regulatory region 475945	1962 bp proximal
Tssr121748	transcription start site region 121748	1629 bp upstream
Tssr121749	transcription start site region 121749	1909 bp downstream
Tssr121750	transcription start site region 121750	1951 bp downstream
Tssr121751	transcription start site region 121751	1965 bp downstream