rs46540072 SNP Detail

Summary

• ID
  rs46540072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8820782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATGATT TTGTAGATAA
  ACGGAGGGTG GAAAAACTTT CGAGTTTTAC AGTAAAAACT TCTTTTGGCT TACAAAATCT
  TTTTTTTTTT CAGAGCCCTA GAGAAAAATG AGTATCTGCA TAATTAAATC AATGTCTCGT
  ATATAATGAA TATCAAGTCG CAAAAGAACG CAAAGACCTG GCAACACAGT TCGAGACGGA
  R
  GCTGCCTGAC TCCTTGGAAG TTTCCTCAGT TTCTTCCTCA CAGAACGTTC CCCCTCCCCA
  CTGTCCTCTC ATGTCTCACA GTGAGAAGGA CACCAACCAG AACAATAAAA CAAATCTTAG
  AACTTGAAAA TCCACAGCCT ACGTACCCCG AAGTCTTGGT CCTCCATGGA GAGAGCTGCT
  CGTGGCTTAG CGAGCCATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52141449	NES15242048	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46540072					SNP	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52141449	NES15242048	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8820782 () rs orientation: forward

Symbol	Name	Function Class
Gm48727	predicted gene, 48727	within coordinates
Gm67475	predicted gene, 67475	within coordinates
Rr427431	regulatory region 427431	within coordinates
Rr427432	regulatory region 427432	817 bp proximal
Tssr96665	transcription start site region 96665	197 bp downstream
Tssr96666	transcription start site region 96666	243 bp downstream