rs46540887 SNP Detail

Summary

• ID
  rs46540887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127685602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AAAGGGCCAT TATAGTGAAT GATATGGGTT AGTGCACTTG
  TATTCCCTCT ATTTCTCTGC CAAACCGTGG TCTGTGGTCA TAGCACTGCA CCACGTGAGA
  Y
  TCTGGTAAGA GATGTCAAGG GTCAGACCCT TACTGAAAAT TAGCTACATC AAAATCTTTG
  TTAGCCAGAG ATGACAGGTC ATGCACGTTA GCTGAGAGTG C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135874367	ENSMUSSNP6393233	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46540887					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127685602 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584893	regulatory region 584893	1632 bp distal
Rr584894	regulatory region 584894	240 bp distal
Rr584895	regulatory region 584895	1387 bp proximal