rs46541835 SNP Detail

Summary

• ID
  rs46541835
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72077714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCTCA CATCGACCAA
  AATCCTTTAA GCAGGAAAAC ATCCTACAAT AACGAAGTTT ACAGATAAGC AAACAAACCT
  GAGAGTTAAT TCCTAGAAAA CTGTCCCAAT AGAAGTGCTT TATGCTGAAA CAAAGGGATG
  CCACATACGG AGTACGAGTA CCAGGAGGGG CTCAAAGTAC AGCTGGAAGG GAAGGTACAA
  R
  CCGCCATGCA CACAGCCCTA GTCCAATCCC CCTCCGGTGG GGGTGGGGGT GGGGGTGGGG
  GTGGGGGGCT ACGGGTACTC ATGGCGGTAT ACACCTTTAA TCCCAGCACT TGGGAGGCTG
  AAGAAGGAGA ATTGTGTGTT TGAAGTCAAC CTGAGATACA TTGCAAGCTT AAGGCTCGTG
  TATGCTACAT TCTAAGTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61419996	NES16807037	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46541835					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61419996	NES16807037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72077714 () rs orientation: forward

Symbol	Name	Function Class
Gm69817	predicted gene, 69817	492 bp downstream
Rr383574	regulatory region 383574	within coordinates