rs46542694 SNP Detail

Summary

• ID
  rs46542694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:27482579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAC TACAAAGGGC AGAGCTGGTA
  R
  AGTAACCCAC CTTTAGAGGA ACCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	MSM/Ms	SM/J
ss148807245	ENSMUSSNP2638534	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss319668059	CHEV_1_27500343	CHEVERUD	SCREENING_POP	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	MSM/Ms	SM/J
rs46542694					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:27482579 () rs orientation: forward

Symbol	Name	Function Class
Gm70420	predicted gene, 70420	within coordinates
Rr371030	regulatory region 371030	within coordinates