rs46543795 SNP Detail

Summary

• ID
  rs46543795
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77500812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCCATTTC TAACAATATA GAATATGTTT CACATTATAG
  AATGACTAGA AATGGTGAAT AAGTTATGCC AAACACTCCT TTAAGTTTAA TATGCAAGTG
  S
  TATAAGAAAT ATTCCTGCAG GGGACTCTTG AATAACGCTG TTTTCTGTGG TCAAGAGATA
  CTTGAAGAAT CATCTACTGA GAGGGATGAA GCAGGCACTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61429600	NES16809162	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46543795					SNP	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61429600	NES16809162	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77500812 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr14	DNA segment, Chr 9, Derry C. Roopenian 14	358 bp proximal
Rr368830	regulatory region 368830	816 bp downstream
Rr683375	regulatory region 683375	708 bp distal
Rr683376	regulatory region 683376	1444 bp proximal