rs46543858 SNP Detail

Summary

• ID
  rs46543858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48194100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCACATG GTACCAAACT
  GTCCCCTTCC CTCTGGAAAC CAGTAAGAAC AAGAAAGGCC CTCGTCACCC CAGAATAAAT
  GGAACTAAAG AACTTCCTCT CCCTTCGGGA CACAACCATA GTCACCCGCA GCTGTGTTGC
  TGTAGTCCTC CTAATAAATA CGTCATGGGA CCAACAGGCA GGACGTCTGT GTGTGGGATT
  Y
  GCCCTACTGT GACACAAGAC TGTGGAATGA GACCTTTTCA CTGTCATCTT GTCACAGCAG
  CATCCAATAG ATGGTTCCCT ACAGACAGAA GCATCTGTGT GGGAGTGAAG AAGTCCAGGC
  AAGACTTCCA GGACACACTG AAGAAACCAA ATGTGGTTTT ATGACACTTG TCAGCTTTTC
  CCAAGACAGC ACAGGCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61394830	NES16768734	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46543858					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394830	NES16768734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48194100 () rs orientation: forward

Symbol	Name	Function Class
Gm51672	predicted gene, 51672	342 bp upstream
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Rr203996	regulatory region 203996	53 bp distal
Rr203997	regulatory region 203997	1257 bp proximal