rs46543865 SNP Detail

Summary

• ID
  rs46543865
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4500412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTAGAC TGATCATCCT
  AAACCCATTC ATAAGCCCTC AGATTCTCTT CCTTTTATTT GGGAGGGTGG TGAAAAATGT
  AACTTTCCTA ACTAACCAGC CCCAGTCTAG CTTTCTGGCT TCATTTTCAG TTATGTATAC
  TAAATTTAAG GTTTAAGCAT ATACTTCTAC ACATTTAGAC ACCAGCTTTT ATAGCTTTTT
  W
  AAAAAATTTT TGTAATAAAC TGATGACATG ACTGTTCCAT AGTATGCTAG ACCTGGTAAT
  TTGAGGAGAG AGAGAGGGAG AGGGAGAGGG AGAAAGAGAA AGAGAAAGAA AGAGAATCGA
  AGGGTTATAA GCTTGGGGAA GTGGGACCCA TGAGCTGCAG AGTTTGAAGT TGGGGAAGAA
  GTGAGAAGAG CTAGGATGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss63636428	NES17047717	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs46543865					SNP	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63636428	NES17047717	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4500412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7918	CpG island 7918	1141 bp proximal
Dnaja3	DnaJ heat shock protein family (Hsp40) member A3	1522 bp upstream
Rr370034	regulatory region 370034	1158 bp upstream
Rr391260	regulatory region 391260	245 bp downstream
Tssr136865	transcription start site region 136865	1551 bp upstream
Tssr136866	transcription start site region 136866	1681 bp upstream