rs46543998 SNP Detail

Summary

• ID
  rs46543998
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79418290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG GTGAGATGCT TAATTTTTTT
  K
  TTAATGAGAA TCAACTCCAA TTCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144776214	ENSMUSSNP5575216	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46543998					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79418290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi462	CpG island 462	435 bp distal
Rr17631	regulatory region 17631	90 bp distal
Rr29696	regulatory region 29696	1289 bp distal
Rr29697	regulatory region 29697	89 bp distal
Scg2	secretogranin II	453 bp upstream
Tssr12435	transcription start site region 12435	559 bp upstream
Tssr12436	transcription start site region 12436	538 bp upstream
Tssr12437	transcription start site region 12437	493 bp upstream
Tssr12438	transcription start site region 12438	465 bp upstream