rs46544539 SNP Detail

Summary

• ID
  rs46544539
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:7840890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC TTGGCTAGCT ACTAACCCAC
  C
  GCAGCCAGCG TCTTTTCCAG AGTGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147048774	ENSMUSSNP1700901	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46544539					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:7840890 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6926	CpG island 6926	within coordinates
Cpgi6927	CpG island 6927	682 bp proximal
Cpgi6928	CpG island 6928	1449 bp proximal
Gdnf	glial cell line derived neurotrophic factor	Intron
Gm63022	predicted gene, 63022	951 bp downstream
Rr498973	regulatory region 498973	1354 bp distal
Rr498974	regulatory region 498974	1407 bp distal
Rr498975	regulatory region 498975	1144 bp distal
Rr498976	regulatory region 498976	553 bp distal
Rr498977	regulatory region 498977	within coordinates
Rr498978	regulatory region 498978	1532 bp proximal
Tssr130579	transcription start site region 130579	1353 bp downstream