rs46544998 SNP Detail

Summary

• ID
  rs46544998
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127271872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTAACA ACAAAGGAGA
  GGGGCGTAAA ACAATGGGAG ACCCTCTTAC CTTGTATTAC TGTTTAATTC TGTTTTTAAG
  ATTGGAATAG GGAGCTGGAG AAATGGCTCA GGGGTTAGTG GCTTACTGGC TGCTCTTCCA
  GAGGTCCCAA GTTCCCAACA TCAACAAGGC AGCTCACAAC TGTCTATAAC TCCAGCTACC
  R
  GGGTACTGAT GCCCTCTTCA CAAATATACA TGCAGGAAAA ATATTACATA TAAAACAAAT
  TTTAAATTGT AATCATATTT AATAATAGTG AAAACACTTA AAACAAATTT TAACTATTAT
  CAGTGACATT ACACAAGGGA ACTTTTTTTT TTTTTTGGTT TTTCAAGACA GGGTTTCTCT
  GTATAGCCCT GGTTGTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135864345	ENSMUSSNP6000700	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320954462	CHEV_3_127181141	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46544998					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127271872 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1956 bp downstream
Gm43355	predicted gene 43355	1212 bp downstream