rs46545746 SNP Detail

Summary

• ID
  rs46545746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161320904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTGTTTTCTT TGATTGGTGG TTTAGTCCCA GGGAGCTCTG
  AGTGTACTGG TTAGTTCATA TTGTTGTTCC TCCTATGGGG CTGCCAACCC CTTCATCTCC
  Y
  TGGGTACTTT CTCTAGCTCC TTCATTAGGG ACCCTGTGCT GTATCCAGTG GATGACTGTG
  AGGATCCAAT TCTGTATTTG CCAGGCACTG GTAGAGCCTC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133147088	ENSMUSSNP5261090	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46545746					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161320904 () rs orientation: forward

Symbol	Name	Function Class
Tnfsf18	tumor necrosis factor (ligand) superfamily, member 18	1320 bp upstream
Tssr9690	transcription start site region 9690	1314 bp upstream