rs46546644 SNP Detail

Summary

• ID
  rs46546644
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99513747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGTCTGC CCTGGAATAT
  GGTTGTCCTA TCAAGGGTCC CTTAAGTCCT TGGAGCTGGT GATGTAGCTC AGTGGTAGGG
  CTCTTACTTA GTGAGACCCT GCATTATGTC CCCCCCAGCA TATCCACACC AACAAGCAGT
  TAAGAGGAAG CTGTTTTAAA GTTGCTAGGC AGAGTGGGCC TCTGGTGTGA ATCTCTCTCT
  W
  GCTGCTTGGA AGTTCTAGAG CGGATGCAGC CCCTAGACTA GACAGTTAAG AGTGGAAATG
  GATCCTCGTT TTTAATTTTT AAAAACATTT ACTTAATAAA ACAAGAGACC CTGAGAGCGA
  GAGCAGGGTC TGTAAAAGAA GTCTTCTGGA AAATCCCAGA TCCCTCTCAT TTCCATTAGG
  GGCTCCAGGG CTCCCTTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61443435	NES16824693	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46546644					SNP	A	A	A	A	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443435	NES16824693	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99513747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22198	CpG island 22198	1573 bp distal
Dzip1l	DAZ interacting protein 1-like	within coordinates
Gm68333	predicted gene, 68333	868 bp upstream
Rr206941	regulatory region 206941	within coordinates
Tssr86688	transcription start site region 86688	1841 bp downstream
Tssr86689	transcription start site region 86689	1818 bp downstream
Tssr86690	transcription start site region 86690	949 bp upstream