rs46547424 SNP Detail

Summary

• ID
  rs46547424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38107244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAGAAGAC ACAAATCTTG TCCTGGTATA GAGGGCACCT
  CATTCTCGTC GTCAGCTTCT TGATAACTGA TAGCACAATG CTTTTCTAAA GGACCCCTGC
  R
  GCTGTACTAC TGTCTTCACT ACTACACCCT CCAATAACAT GTGTCTCTGT CTAATGTCTA
  TCGCCCTCAA CTTATGCCAC CAACAACTTG AGGTCACGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss146361621	ENSMUSSNP2941841	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss325801299	CHEV_19_38193286	CHEVERUD	SCREENING_POP	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46547424					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38107244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	428 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Rr547239	regulatory region 547239	1117 bp proximal
Tssr156245	transcription start site region 156245	462 bp downstream
Tssr159111	transcription start site region 159111	1995 bp upstream
Tssr159112	transcription start site region 159112	1945 bp upstream
Tssr159113	transcription start site region 159113	1880 bp upstream
Tssr159114	transcription start site region 159114	477 bp upstream
Tssr159115	transcription start site region 159115	421 bp upstream
Tssr159116	transcription start site region 159116	319 bp upstream
Tssr159117	transcription start site region 159117	305 bp upstream