rs46547922 SNP Detail

Summary

• ID
  rs46547922
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12476369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TAAGCGCTTT GCTCCGACTT GTGTCCCCTG ACGGACGCCG TCCGGTTCCC
  S
  GAGCCGCCAC AGGCAGAGGG CGGGGTCAGC CCGCGGCCGT TTCCGCGAGA           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148681955	ENSMUSSNP677360	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46547922					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12476369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	within coordinates
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	752 bp downstream
Rr369647	regulatory region 369647	230 bp downstream
Tssr118345	transcription start site region 118345	791 bp downstream
Tssr121453	transcription start site region 121453	375 bp upstream
Tssr121454	transcription start site region 121454	71 bp upstream
Tssr121455	transcription start site region 121455	within coordinates
Tssr121456	transcription start site region 121456	50 bp downstream
Tssr121457	transcription start site region 121457	74 bp downstream